Genometric Analysis Simulation Program (GASP)
Program to generate samples of family data based on user specified genetic models.
url: research.nhgri.nih.gov/gasp/
Haplo
Fortran 77 code by Daniel E. Weeks and Kenneth Lange for haplotyping with computation of conditional probabilities.
url: watson.hgen.pitt.edu/register/docs/haplo.html
LIPED
Fortran program by Jurg Ott to carry out genetic linkage analysis -- estimate the recombination fraction, by calculating pedigree likelihoods for various assumed values of the recombination fraction. Only two loci can be handled at a time, for example, a disease locus and a marker locus.
url: linkage.rockefeller.edu/ott/liped.html
Naccess
Fortran program to calculate the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids. Free for academics.
url: wolf.bi.umist.ac.uk/naccess/
